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Connectomics Services

We provide the neuroscience community with tailored solutions for every stage of the connectomics pipeline - from raw image processing to publication-ready interactive datasets.

Image Montaging & Alignment

Linear and nonlinear alignment methods to stitch and align large-scale image volumes within and across sections. Main experiences on EM volumes alignment, but also cross-modality alignments and alignment to reference atlases are supported.

Image Segmentation

Scalable image segmentation tasks, extracting semantically meaningful structures from large image datasets such as synapses, mitochondria, vesicles, cell bodies. We are working with collaborating companies for large-scale cell segmentation and CAVE hosting.

NeuroMaps Community Workspace

Collaborative workspaces for community proofreading powered by CAVE to streamline proofreading cell segmentations, reviewing synapses, identifying cell types and task management for proofreading teams.

Expert Proofreading

We offer expert proofreading services built on our NeuroMaps platform - including neuron proofreading, synapse review, and structured cell annotations, all tailored to your specific project. We are working with collaborating companies to provide human expertise for proofreading projects.

Publication Figure Workspaces

Custom interactive workspaces linked directly from your journal publication and figures to highlight certain aspect of the circuit. It allows readers to interactively explore published neural circuits. See Gallery for examples.

Public Dataset Workspaces

Customize static workspace for exploration of published datasets. Providing long-term hosting of image data and derived datasets - segmentations, connectivity graphs, and cell annotations to keep them accessible well beyond publication. See Datasets for examples.

Custom Software Development

Development of specific user interface solutions, enhancement of existing widgets, and implementation of new visualization or analysis widgets. We also provide easy-to-use interfaces to wrap your existing custom analysis code.

Ready to start a project?

Get in touch to discuss your dataset and requirements. We are happy to provide a custom quote for any scope of work.

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